Journal: Molecular Oncology

Article Title: Proteomic characterization of peroxisome proliferator‐activated receptor‐γ (PPARγ) overexpressing or silenced colorectal cancer cells unveils a novel protein network associated with an aggressive phenotype

doi: 10.1016/j.molonc.2016.07.006

Figure Lengend Snippet: Visual representation of the network generated by Ingenuity Pathway Analysis (IPA). The network included the 5 identified/validated proteins and PPARg with direct and indirect interactions (EZR, LMNA, ENOA, PHB, and RUVBL2 orange stained) with PPARg ...

Article Snippet: Protein network analyses The MS‐identified proteins whose expression change was confirmed by western blotting were further analyzed by (Ingenuity Pathway Analysis) IPA software (GeneGo Inc., St. Joseph, MI, USA).

Techniques: Generated, Staining

Journal: PLoS ONE

Article Title: Systems Analysis of a Mouse Xenograft Model Reveals Annexin A1 as a Regulator of Gene Expression in Tumor Stroma

doi: 10.1371/journal.pone.0043551

Figure Lengend Snippet: The interaction network for most of the molecules on the list in was built by IPA software (Ingenuity company).

Article Snippet: Using Genomatix and IPA software, we obtained lists of biological processes or functions with a list of molecules in each process or function.

Techniques: Software

Journal: PLoS ONE

Article Title: Systems Analysis of a Mouse Xenograft Model Reveals Annexin A1 as a Regulator of Gene Expression in Tumor Stroma

doi: 10.1371/journal.pone.0043551

Figure Lengend Snippet: The sub-cellular distribution of the molecules on the interaction network was built by IPA software (Ingenuity company).

Article Snippet: Using Genomatix and IPA software, we obtained lists of biological processes or functions with a list of molecules in each process or function.

Techniques: Software